Package: GSSTDA
Title: Progression Analysis of Disease with Survival using Topological
        Data Analysis
Version: 1.0.0
Authors@R: 
    c(
	person(given = "Miriam", 
           family = "Esteve", 
           role = c("aut", "cre"),
           email = "miriam.estevecampello@uchceu.es",
           comment = c(ORCID = "0000-0002-5908-0581")),
	person(given = "Raquel", 
           family = "Bosch", 
           role = c("aut"),
		   email = "raquel.boschromeu@uchceu.es"),
	person(given = "Jaume", 
           family = "Forés", 
           role = c("aut"),
		   email = "fores.martos.jaume@gmail.com",
           comment = c(ORCID = "0000-0002-9025-4877")),
	person(given = "Joan", 
           family = "Climent", 
           role = c("aut"),
		   email = "joan.climentbataller@uchceu.es"),
    person(given = "Antonio", 
           family = "Falco", 
           role = c("aut"),
		   email = "afalco@uchceu.es")
    )
Description: Mapper-based survival analysis with transcriptomics data
        is designed to carry out. Mapper-based survival analysis is a
        modification of Progression Analysis of Disease (PAD) where
        survival data is taken into account in the filtering function.
        More details in: J. Fores-Martos, B. Suay-Garcia, R.
        Bosch-Romeu, M.C. Sanfeliu-Alonso, A. Falco, J. Climent,
        "Progression Analysis of Disease with Survival (PAD-S) by
        SurvMap identifies different prognostic subgroups of breast
        cancer in a large combined set of transcriptomics and
        methylation studies" <doi:10.1101/2022.09.08.507080>.
License: GPL-3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
LazyData: true
LazyDataCompression: xz
DependsNote: BioC (>= 3.2)
Imports: base, cluster, stats, survival, utils, visNetwork,
        ComplexHeatmap, circlize, devtools
Suggests: rmarkdown, knitr, testthat (>= 3.0.0)
SuggestsNote: BioC (>= 3.0), Recommended: affy, oligoClasses, oligo,
        GEOquery, DupChecker, arrayQualityMetrics, vctrs, frma,
        a4Preproc, genefu, plyr, preprocessCore, hgu133plus2.db
VignetteBuilder: knitr
Config/testthat/edition: 3
Depends: R (>= 3.5.0)
RoxygenNote: 7.2.3
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libfribidi-dev git make libharfbuzz-dev libgit2-dev libicu-dev
        libjpeg-dev libpng-dev libtiff-dev libuv1-dev libwebp-dev
        libxml2-dev libssl-dev perl libx11-dev zlib1g-dev
Repository: https://miriamesteve.r-universe.dev
Date/Publication: 2024-08-01 20:29:04 UTC
RemoteUrl: https://github.com/miriamesteve/gsstda
RemoteRef: HEAD
RemoteSha: fddde620fdc5d119ea76e50edd0fa8389929c3ab
NeedsCompilation: no
Packaged: 2026-10-03 07:51:29 UTC; root
Author: Miriam Esteve [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-5908-0581>),
  Raquel Bosch [aut],
  Jaume Forés [aut] (ORCID: <https://orcid.org/0000-0002-9025-4877>),
  Joan Climent [aut],
  Antonio Falco [aut]
Maintainer: Miriam Esteve <miriam.estevecampello@uchceu.es>