{ "_id": "6a228ab8cd65a98ecbd5458c", "Package": "GSSTDA", "Title": "Progression Analysis of Disease with Survival using Topological\nData Analysis", "Version": "1.0.0", "Authors@R": "c(\nperson(given = \"Miriam\",\nfamily = \"Esteve\",\nrole = c(\"aut\", \"cre\"),\nemail = \"miriam.estevecampello@uchceu.es\",\ncomment = c(ORCID = \"0000-0002-5908-0581\")),\nperson(given = \"Raquel\",\nfamily = \"Bosch\",\nrole = c(\"aut\"),\nemail = \"raquel.boschromeu@uchceu.es\"),\nperson(given = \"Jaume\",\nfamily = \"Forés\",\nrole = c(\"aut\"),\nemail = \"fores.martos.jaume@gmail.com\",\ncomment = c(ORCID = \"0000-0002-9025-4877\")),\nperson(given = \"Joan\",\nfamily = \"Climent\",\nrole = c(\"aut\"),\nemail = \"joan.climentbataller@uchceu.es\"),\nperson(given = \"Antonio\",\nfamily = \"Falco\",\nrole = c(\"aut\"),\nemail = \"afalco@uchceu.es\")\n)", "Description": "Mapper-based survival analysis with transcriptomics data\nis designed to carry out. Mapper-based survival analysis is a\nmodification of Progression Analysis of Disease (PAD) where\nsurvival data is taken into account in the filtering function.\nMore details in: J. Fores-Martos, B. Suay-Garcia, R.\nBosch-Romeu, M.C. Sanfeliu-Alonso, A. Falco, J. Climent,\n\"Progression Analysis of Disease with Survival (PAD-S) by\nSurvMap identifies different prognostic subgroups of breast\ncancer in a large combined set of transcriptomics and\nmethylation studies\" .", "License": "GPL-3", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "LazyData": "true", "LazyDataCompression": "xz", "DependsNote": "BioC (>= 3.2)", "SuggestsNote": "BioC (>= 3.0), Recommended: affy, oligoClasses, oligo,\nGEOquery, DupChecker, arrayQualityMetrics, vctrs, frma,\na4Preproc, genefu, plyr, preprocessCore, hgu133plus2.db", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "RoxygenNote": "7.2.3", "Config/pak/sysreqs": "cmake libfontconfig1-dev libfreetype6-dev\nlibfribidi-dev git make libharfbuzz-dev libgit2-dev libicu-dev\nlibjpeg-dev libpng-dev libtiff-dev libuv1-dev libwebp-dev\nlibxml2-dev libssl-dev perl libx11-dev zlib1g-dev", "Repository": "https://miriamesteve.r-universe.dev", "Date/Publication": "2024-08-01 20:29:04 UTC", "RemoteUrl": "https://github.com/miriamesteve/gsstda", "RemoteRef": "HEAD", "RemoteSha": "fddde620fdc5d119ea76e50edd0fa8389929c3ab", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-05 08:32:16 UTC", "User": "root" }, "Author": "Miriam Esteve [aut, cre] (ORCID:\n),\nRaquel Bosch [aut],\nJaume Forés [aut] (ORCID: ),\nJoan Climent [aut],\nAntonio Falco [aut]", "Maintainer": "Miriam Esteve ", "MD5sum": "49299e7d3c7eeccb5e2c6fbcd61a9965", "_user": "miriamesteve", "_type": "src", "_file": "GSSTDA_1.0.0.tar.gz", "_fileid": "2a2f8f12fdd64e3881fa77d8cc8873a8994a414e8afb958f177f05226627873b", "_filesize": 4566737, "_sha256": "2a2f8f12fdd64e3881fa77d8cc8873a8994a414e8afb958f177f05226627873b", "_created": "2026-06-05T08:32:16.000Z", "_published": "2026-06-05T08:37:12.303Z", "_distro": "noble", "_jobs": [ { "job": 79692659451, "time": 251, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7432324503" }, { "job": 79692659439, "time": 207, "config": "linux-release-x86_64", "r": 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"check_filter_values", "title": "check_filter_values", "topics": [ "check_filter_values" ] }, { "page": "check_full_data", "title": "check_full_data", "topics": [ "check_full_data" ] }, { "page": "check_gene_selection", "title": "check_gene_selection", "topics": [ "check_gene_selection" ] }, { "page": "check_vectors", "title": "check_vectors", "topics": [ "check_vectors" ] }, { "page": "clust_all_levels", "title": "Get clusters for all data level", "topics": [ "clust_all_levels" ] }, { "page": "clust_lev", "title": "Get clusters for a particular data level", "topics": [ "clust_lev" ] }, { "page": "compute_node_adjacency", "title": "Computes the adjacency matrix.", "topics": [ "compute_node_adjacency" ] }, { "page": "cox_all_genes", "title": "Survival analysis based on gene expression levels.", "topics": [ "cox_all_genes" ] }, { "page": "denoise_rectangular_matrix", "title": "Rectangular Matrix Denoiser.", "topics": [ "denoise_rectangular_matrix" ] }, { "page": "dsga", "title": 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